PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3401_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 868aa    MW: 96415.6 Da    PI: 6.0746
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3401_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24152253199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+         +++++  +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l
  RrC3401_p2 152 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 246
                 99*********************999****996444444..8************************************************..4577778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  RrC3401_p2 247 MVGVRRA 253
                 *****97 PP

2Auxin_resp109.43.7e-36279362183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++++++F +++nPra+++eFv++++k++ka+  +++svGmRf m+feteds +rr++Gt+vg+sd+dp+rW++SkWr+L+
  RrC3401_p2 279 AAHATANRTPFLIFFNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDMDPLRWSGSKWRNLQ 362
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-45142282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-40146260IPR015300DNA-binding pseudobarrel domain
CDDcd100176.27E-23151252No hitNo description
PROSITE profilePS5086313.155152254IPR003340B3 DNA binding domain
SMARTSM010191.1E-25152254IPR003340B3 DNA binding domain
PfamPF023624.4E-22152253IPR003340B3 DNA binding domain
PfamPF065077.8E-31279362IPR010525Auxin response factor
PROSITE profilePS5174522.427759843IPR000270PB1 domain
SuperFamilySSF542779.81E-7773837No hitNo description
PfamPF023092.6E-6803843IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MMTFVEDKMK TNGFANGGTK TTSQSTLLEE MKLLKDQSGT RKQVINSELW HACAGPLVCL  60
PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL MCQVHNVTLH ADKDSDEIYA  120
QMSLQPVHSE RDVLPVPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP  180
LDYTAQPPTQ ELVVRDLHEN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR  240
DEKSQLMVGV RRANRHQQTA LPSSVLSADS MHIGVLAAAA HATANRTPFL IFFNPRACPA  300
EFVIPLAKYR KAICGSQLSV GMRFGMMFET EDSGKRRYMG TIVGISDMDP LRWSGSKWRN  360
LQVEWDEPGC NDKPTRVSPW DIETPESLFI FPSLTSGLKR QLHPSYFAGE TEWGSLIKRP  420
LIRVSDSTNG ILPYASFPNM ASEQLMKMMM RPHNNNNNQI ATSSFMSEML QQNVLMGHGG  480
GLLGDMNMQQ PMVMRQKPEM VQQPESKITL NPSTAANTTG QEQNLSQNMT APPKSEHYGN  540
EQKSVEQASQ VRTVTVFNED ALSPLQAEPC PDTSQQIYPP QSDPINGFSF LETEELTSFH  600
SLAGSSLLSS QEDSSAVVLP DSTNSSLFHD VWDNQLSGLK FDQFSPLMQQ DLYGCQDSTT  660
SNILDPPPLS NTVLDDFCAI QNHHPSDCLV GNSNTRFAQD VQSSQITTAS FADSKAFSRQ  720
DNSGGTTVTS SSNVDFDDST LLQQNSKGSW QKLATPRVRT YTKVQKTGSV GRSIDVTSFR  780
DYKELKTAIE CMFGLEGLLT RPQSSGWKLV YVDYESDVLL VGDDPWEEFV GCVRCIKILS  840
PVEVEQMSEE GMKLLNSACI TDLKTSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.023875392Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794650.0JN979465.1 Brassica rapa subsp. pekinensis auxin response factor 5-1 (ARF5-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641924.10.0PREDICTED: auxin response factor 5-like
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A078GW890.0A0A078GW89_BRANA; Auxin response factor
STRINGfgenesh2_kg.1__2164__AT1G19850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein